Package index • RDaggregator

All functions

RDaggregator_options(): Options for RDaggregator

copy_dict_template() add_dictionary() experimental: Add a dictionary

add_associated_genes(): Add ORPHAcodes-genes associations to RDaggregator.

add_nomenclature_pack(): Add a nomenclature pack to RDaggregator

add_superNode(): Add an extra node above the roots of the graph

get_parents() get_children() get_ancestors() get_descendants() get_siblings() complete_family() get_LCAs(): Analyze ORPHA classifications

apply_orpha_indent(): Indentation

load_classifications() load_all_classifications() is_in_classif(): Orphanet classifications

color_codes() color_class_levels(): Color graphs

get_all_labels(): Disease labels

find_roots() find_leaves(): Operations on graphs

group_by(<orpha_df>): Build group using Orphanet classifications

horizontal_positions(): Calculate horizontal coordinates for each node of the given graph

horizontal_sizes(): Compute how large should be the graph at each depth

in_between_graph(): Extract a graph from a set of ORPHAcodes

interactive_plot(): Dynamic plot

layout_tree() vertical_positions(): Plot using a tree-like layout

load_associated_genes() load_genes_synonyms(): Associated genes

load_raw_nomenclature() load_nomenclature(): ORPHAcodes properties

load_redirections() load_raw_redirections(): Redirections

load_synonyms(): Synonyms

merge_graphs() questioning: Merge graphs

minimize_graph(): Minimize a graph

specify_code() check_orpha_gene_consistency(): ORPHAcodes and genes

orpha_df(): Prepare grouping

get_label() get_classification_level() get_status() is_active() get_type(): ORPHAcode specific properties

redirect_code(): Apply ORPHAcodes redirections.

subtype_to_disorder() get_lowest_groups(): Find specific ancestors